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Department of Genetics


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Here we list the softwares developed and under development by the Statiscal-Genetics Laboratory and partners.


Software for constructing genetic maps in experimental crosses: full-sib, RILs, F2 and backcrosses. To install, we recommend the under development (and constantly upgraded) version from github:

Otherwise, you can install the stable version:

The original article can be found at:


It is a graphical Bayesian inference tool for genotyping polyploid compatible with any quantitative genotyping methods. It was mainly developed by Oliver Serang as visiting scientist in the Lab. A suitable pipeline adapted for many markers will be released soon. It can be found at:

The original article can be found at:


It is an R package to compute relationship matrices for diploid and autopolyploid species. It handles pedigree and molecular data with dosage. It has been developed in collaboration with Bluberry Breeding & Genomic Lab at University of Florida. It can be found at:

The original article can be found at:


Software for QTL mapping in outcrossing species using composite interval mapping. It is under development and will be released soon. Based on Gazaffi et. al 2014.